Adam Nichols
Comments
Recent activity by Adam Nichols
-
You are welcome, glad to hear it. This is a really complicated domain where small things matter, and you are right to question the change.
- View comment
- 0 votes
-
Tomorrow I'll test out an optional array with length >1 to determine whether the issue is specifically about inputs with length 1. That would be great to know, yes.
- View comment
- 0 votes
-
I see it now, thank you! I ran the WDL through womtool on the command line and the results are the same as in the UI: womtool inputs CGA_WES_Characterization_Pipeline_v0.1_Dec2018.2.wdl includes th...
- View comment
- 0 votes
-
Interesting, thanks for the update. I still believe you may be relying on undocumented functionality and recommend you implement the previously-suggested approach: Can you try putting `[ ]` around ...
- View comment
- 0 votes
-
Based on a quick browse through the WDL spec, I think the coercion from File to Array[File] is not actually supported - rather, it happened to work by accident. Such an accident is never guaranteed...
- View comment
- 0 votes
-
I can't review it, because I do not have access to that workspace.
- View comment
- 0 votes
-
Hi, In reference to However, since I tried launching the workflow yesterday afternoon going forward, this no longer works. can you please provide screenshots and/or exact error messages, please.
- View comment
- 0 votes
-
Based on what I can see from here, an older implementation of draft-2 in FireCloud erroneously excluded non-optional task inputs for which a default was provided. Is your workflow impaired from run...
- View comment
- 0 votes
-
The application automatically detects the WDL version based on the version header (no header for draft-2, version 1.0 for 1.0). You cannot use features from WDL 1.0 in a draft-2 WDL, like the input...
- View comment
- 0 votes
-
Also, I would not expect the change in display of method configuration to have any functional impact, so you could simply proceed using draft-2 with the knowledge that the display has changed.
- View comment
- 0 votes