Martin Aryee
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Recent activity by Martin Aryee
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Hi Jason, Great - This looks promising. I'm hopeful we can use APIs or FISS for creating the sample entities. The one challenge I see is that we have to sort out authentication from within a task. ...
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I have only a slight modification of the situation you described: There is a Sequencing Runs table where each row is a single sequencing run (corresponding to a set of FASTQs). Each sequencing run...
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Do you know if this made it in before the May 1 switchover, or should I revert to the Firecloud interface for now?
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Great - That did the trick. Our GPU tasks are now running happily in Terra. Thanks very much, Martin
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Let’s do it for aryee-merkin. Thanks!
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It would be great to be added to the PAPIv2 beta/whitelist. I'm not running any production workflows and can tolerate the risk. Thanks! Martin
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That workflow fails for me with this in the task stdout: { "error": { "errors": [ { "domain": "global", "reason": "forbidden", "message": "Required 'compute.instances.get' permission for 'projects/...
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Great - Thanks. I've shared the workspace with GROUP_FireCloud-Support@firecloud.org. Example failed job:https://job-manager.dsde-prod.broadinstitute.org/jobs/485faec9-7fc0-485b-9872-429e988d2da1
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Update: I think there are two separate problems here. I resubmitted the job above (without any changes) and this time it got past the PAPI error 10.13 stage but then fails again with the nvidia-doc...
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@AdamNichols - I tried submitting a simpler workflow requesting a GPU with just the two commands you suggested: workflow cuda-test { call get_machine_info}task get_machine_info { command <<< nvidi...
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