Martin Aryee
Activity overview
Latest activity by Martin Aryee
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Martin Aryee commented,
Hi Jason, Great - This looks promising. I'm hopeful we can use APIs or FISS for creating the sample entities. The one challenge I see is that we have to sort out authentication from within a task. ...
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Martin Aryee commented,
I have only a slight modification of the situation you described: There is a Sequencing Runs table where each row is a single sequencing run (corresponding to a set of FASTQs). Each sequencing run...
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Martin Aryee created a post,
Can a (demultiplexing) workflow create new (sample) entities?
We are building a demultiplexing workflow that takes as input a set of FASTQs and a sample sheet from a sequencing run. Each sequencing run is an entity in a "Sequencing Runs" table. The workflow c...
- Martin Aryee
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Martin Aryee created a post,
Zombie machines from failed tasks running up costs
(I also submitted a note through Contact Us but figured this may be a better forum since other users should probably be aware) One of our submissions failed 6 days ago because of file permissions p...
- Martin Aryee
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Martin Aryee created a post,
How do I tell what machine type was used for a task?
In Firecloud I can access an operation log to get details on the machine type used for a specific task (e.g. n1-standard-8). Is this visible in Terra too?
- Martin Aryee
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- 2 comments
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- Completed
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Martin Aryee commented,
Do you know if this made it in before the May 1 switchover, or should I revert to the Firecloud interface for now?
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Martin Aryee commented,
Great - That did the trick. Our GPU tasks are now running happily in Terra. Thanks very much, Martin
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Martin Aryee commented,
Let’s do it for aryee-merkin. Thanks!
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Martin Aryee commented,
It would be great to be added to the PAPIv2 beta/whitelist. I'm not running any production workflows and can tolerate the risk. Thanks! Martin
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Martin Aryee commented,
That workflow fails for me with this in the task stdout: { "error": { "errors": [ { "domain": "global", "reason": "forbidden", "message": "Required 'compute.instances.get' permission for 'projects/...
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