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Allie Hajian

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Articles

Recent activity by Allie Hajian

  • How to retrieve the time and cost of a completed workflow

    Below is an example of how the time and cost is obtained after a submitted workflow on Terra has completed. Note that workflow data on BigQuery is not available until some hours after the workflow ...

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  • Using the Command Line Interface (CLI) to upload a workflow 

    The FireCloud Command Line Interface (CLI) provides another option to upload workflows (WDL) to the Method Repository. Download the FireCloud Command Line Interface. You can also run a Docker ver...

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  • Job History overview (monitoring workflows)

    The Job History tab is your workspace operations dashboard, where you can check the status of past and current workflow submissions, drill down to see what’s going on (i.e., troubleshoot), and find...

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  • Getting started with GATK workflows in the cloud FAQs

    If you're new to running GATK on a cloud-based platform, or new to Terra, this information will help you start. From preprocessing raw sequencing data through variant calling and joint calling, sho...

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  • Interactive analysis apps: Galaxy, Jupyter notebooks and RStudio

    Integrated Jupyter Notebooks, RStudio and Galaxy apps let you analyze data in real time in a Terra workspace. These apps run on virtual machines in a dedicated workspace Cloud Environment. This art...

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  • Pipelining with workflows

    An introduction to workflows - one of two analysis modes you can use on the Terra platform. Workflows, aka pipelines, are a series of steps performed by an external compute engine - often used for ...

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  • Understanding data in the Cloud

    Where are large amounts of cloud data stored, accessed, analyzed, and shared with colleagues?  How do you organize and track original and generated data? This article helps you  understand Terra's ...

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  • Overview: How much does my interactive analysis cost?

    Executing jobs on the cloud can be scary if you don't know how much you're spending. Read on for an overview of how to estimate the cost of an interactive analysis in Terra. Cloud Environment (i.e....

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  • Controlling Cloud costs - sample use cases

    Considering key Cloud costs described in Understanding and controlling Cloud costs, we examine some use cases and provide the framework for their costs. Specific costs will vary based on software v...

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  • Overview: Controlling Cloud costs on Terra

    This document provides information on the costs of using key cloud services (Google Cloud Storage, Google Computer Engine, and Google BigQuery). Review some examples that can help you make informed...

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