Allie Hajian
Articles
Votes on activity by Allie Hajian
-
July 11, 2019
The following release notes correspond to the dates July 3-11, 2019 Terra UI Workspace OWNERS can change the Google billing account associated with a Terra project [SATURN-58] With this update...
- Updated
- 2 followers
- 1 comment
- 0 votes
-
Getting started with GATK workflows in the cloud FAQs
If you're new to running GATK on a cloud-based platform, or new to Terra, this information will help get you started. From preprocessing raw sequencing data through variant calling and joint callin...
- Updated
- 2 followers
- 0 comments
- 0 votes
-
How to get submission status and access error logs in Terra versus FireCloud
Batch jobs do not always run successfully, and when they don't, you need to be able to track down what went wrong. This article is for those who already know how to ferret out problems on Firecloud...
- Updated
- 1 follower
- 0 comments
- 0 votes
-
Getting workflows up and running faster with a JSON file
Avoid manually typing in workflow inputs and outputs - and get your WDL up and running in record time - by using a JSON file for setup. JSONs help with reproducibility. They're especially useful wh...
- Updated
- 1 follower
- 0 comments
- 0 votes
-
Workflow setup: VM and other options
This article outlines workflow runtime options (including cost saving options) - what they are and how to specify them. If this is your first time running a workflow, the default runtime options ar...
- Updated
- 2 followers
- 0 comments
- 0 votes
-
Where's the link for a file in workspace storage?
You may need the full path (Uniform Resource Identifier, or URI) to the files in your workspace storage (Google bucket) when bringing data into a Cloud Environment or creating a data table. The ful...
- Updated
- 1 follower
- 0 comments
- 0 votes
-
April 27, 2020
The following release notes correspond to the dates April 22 to April 27, 2020. Interactive analysis (notebooks) Bug fix in Hail image We updated the default terra-jupyter-hail image to hail 0.2.3...
- Updated
- 1 follower
- 0 comments
- -1 votes
-
How to test workflows locally
When creating WDL workflows, you can test on a local installation of the Cromwell execution engine before uploading and testing in Terra. Cromwell is the workflow execution service used to run and ...
- Updated
- 4 followers
- 4 comments
- -1 votes
-
Broad Genomics: Downloading data from a Terra workspace
This article describes ways Broad users can retrieve data stored in a Workspace bucket in Terra. If you have not yet registered for a Terra account, find step-by-step instructions in How to regist...
- Updated
- 2 followers
- 0 comments
- -1 votes
-
How to clone your own workspace
Learn how cloning a workspace makes a completely independent copy of the workspace under your own Billing project. Since you are the owner and sole user (until you choose to "share" your copy with ...
- Updated
- 3 followers
- 0 comments
- -1 votes