Chris Llanwarne

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3. Terra fails to delocalize files listed through read_lines()

Hi Guilio,   I'm glad you managed to get these working with the workarounds you mentioned. I can answer your questions about _why_ Cromwell ended up the way it is but in general I agree - it would ...

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• July 16, 2020 13:41
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3. How do I unsubscribe from emails whenever public repos get more data

+1, I would like to unsubscribe from these too

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• April 02, 2020 20:59
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3. Cromwell WorkFlow getting aborted intermittently without any exception

Thanks for trying out server mode, sorry to hear that it didn't work out. I've updated https://github.com/broadinstitute/cromwell/issues/4960 with the results. Unfortunately it sounds like we do ha...

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• May 13, 2019 13:00
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3. Cromwell WorkFlow getting aborted intermittently without any exception

Here's a link to the Cromwell docs discussing run mode vs server mode: https://cromwell.readthedocs.io/en/develop/Modes/#server

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• May 10, 2019 16:05
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3. Cromwell WorkFlow getting aborted intermittently without any exception

Hi ssb_cromwell -   This looks new to us. We haven’t tested the AWS backend with large files so it’s quite possible that you have uncovered a genuine bug. I’ll create a github issue for you to foll...

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• Edited May 10, 2019 16:04
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3. GPU task error: "Could not load UVM kernel module. Is nvidia-modprobe installed?"

Hi Martin - I just want to confirm this with you one last time before we push the button on this. The change will update all workspaces in the project to use PAPIv2 instead of PAPIv1. In case that...

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• May 02, 2019 21:34
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3. GPU task error: "Could not load UVM kernel module. Is nvidia-modprobe installed?"

Hi aryee - I've done a little experimentation myself and talked to a few other users who have been using GPUs in their workflows. It appears that the way to make GPU support work is to use PAPIv2 r...

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• May 02, 2019 19:49
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3. GPU task error: "Could not load UVM kernel module. Is nvidia-modprobe installed?"

Update: I've copied and tried the WDL that Adam suggested above and have recreated your issue. I suspect that this is an issue with the driver versions being used. I'm continuing to investigate fro...

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• May 02, 2019 15:21
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3. GPU task error: "Could not load UVM kernel module. Is nvidia-modprobe installed?"

Oh, oops! I bet that our hard-coded project name is causing the problem: broad-dsde-cromwell-dev Would you be able to swap that out for your google project name and try again?

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• May 02, 2019 15:11
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3. GPU task error: "Could not load UVM kernel module. Is nvidia-modprobe installed?"

Hi @aryee, can we test that the permissions on your account and project are set up correctly by attempting to run the following workflow? It should require no inputs. It's one of our test cases, an...

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• May 02, 2019 14:15
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