User

Megan Shand

Member since
Total activity 111
Last activity
Following 0 users
Followed by 0 users
Votes 32
Subscriptions 33

Posts

Votes on activity by Megan Shand

  • Updating Tool Snapshot

    I have to update tool snapshots very often. This is something I still have to bounce back to Firecloud to do because I can't find a way to do it in Terra. Usually when I need to go back to Fireclou...

    • 4 followers
    • 4 comments
    • 5 votes

  • Filtering data model by set

    It would be incredibly helpful to be able to view (or download) the rows of a data model that are members of a set. If there's a way to do this right now, I'm not aware of it. If I download the set...

    • 5 followers
    • 4 comments
    • 3 votes

  • Resubmitting Failed Workflows Makes a new Set

    The new feature to be able to resubmit failed workflows is amazing! It has already saved me a ton of time and made my Terra experience better. However, I found it surprising that it generated a new...

    • 4 followers
    • 5 comments
    • 3 votes

  • Seeing Inputs and Outputs to a task in Job Manager

    It would be great to be able to see a list of inputs and outputs for an individual task in Job Manger. You can see an Inputs tab and an Outputs tab for each subworkflow, but I can't find a way to s...

    • 6 followers
    • 7 comments
    • 2 votes
    • Completed

  • Fixing Cache Miss: 10 failed copy attempts

    I have workflows that have tasks that don't depend on specific inputs (for example something like GetBwaVersion in the WGS pipeline). I frequently run into the problem that these tasks don't call c...

    • 2 followers
    • 4 comments
    • 1 vote

  • Way of knowing output is the latest version/run in data model

    Sometimes we rerun workflows multiple times as the version of a pipeline matures. In this case some of the columns in the data model will be filled in from previous runs, but when we run the latest...

    • 1 follower
    • 0 comments
    • 1 vote

  • Workflows should default to correct entity type

    When I export a method from the Broad Methods Repository I get a window that looks like this: where I can select a root entity type. But when it exports to Terra it loses that root entity type and...

    • 2 followers
    • 2 comments
    • 1 vote
    • Completed

  • Snapshot list is lexicographic sorting

    It's amazing that I can now update a snapshot from the tool page in Terra! I did notice that the sorting of the snapshot numbers is lexicographic:  

    • 3 followers
    • 2 comments
    • 1 vote
    • Completed

  • Columns in Job Manager

    In the monitoring tab of Firecloud there are a few columns that are (semi) human readable such as Data Entity: But in Job Manager I lose that column: It would also be nice if the Workspace ID cou...

    • 3 followers
    • 2 comments
    • 1 vote
    • Completed

  • Accessing data in Terra Notebooks

    I currently use `firecloud.api` to interact with the data in my workspace from the notebooks. This means that there’s actually nothing associating my notebooks to a given workspace (within my pytho...

    • 3 followers
    • 2 comments
    • 1 vote