User

Chet Birger

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Recent activity by Chet Birger

  • Setting up built-in cost reporting

    I am setting up workflow cost reporting, as described in the post https://support.terra.bio/hc/en-us/articles/360037862771#h_01EX5ED53HAZ59M29DRCG24CXY  I would like to set up the built-in cost rep...

    • 1 follower
    • 0 comments
    • 0 votes

  • impact of project-per-workspace on existing automation tools

    I just learned about the new single project per workspace change in the 9/27 release of Terra.  This is a major change which is likely to have a significant impact on many of the automation tools w...

    • 2 followers
    • 4 comments
    • 0 votes

  • Workflow submissions requiring drs to gs resolution stalled and tasks not running.

    We are running a workflow where the input BAMs reside on GDC-managed google buckets and the files are identified by URIs containing the files' UUIDs; e.g. "drs://dataguids.org/8466e786-5981-421d-ab...

    • 2 followers
    • 1 comment
    • 0 votes

  • Unable to export workflow to workspace

    I am unable to export a workflow to a workspace.  I receive the error: Error: Substream Source(EntitySource) cannot be materialized more than once I tried with both an existing workspace and a new ...

    • 2 followers
    • 10 comments
    • 0 votes
    • Completed

  • automated email notification of shared workspace has "None None" as subject

    We have portal that uses a service account to generate Terra workspaces.  It then shares the workspace with a user (identified by the google address with which the user registered with the portal)....

    • 2 followers
    • 1 comment
    • 0 votes

  • Group read access to google bucket not functioning

    I am the owner of a bucket, getzlab-workflows-reference_files-getzlab_ca.  I have granted the group Getz_Lab@firecloud.org Storage Object Viewer privileges for that bucket, but several members of t...

    • 2 followers
    • 2 comments
    • 0 votes

  • intermittent task failing during localization of BAMs

    This may be related to the earlier bug where tasks were hanging during localization of BAMs.  In my case tasks are not hanging, but rather reporting a failure.  While intermittent, when scattering ...

    • 2 followers
    • 16 comments
    • 0 votes

  • unable to view status of running job

    I am unable to retrieve job status of a recently submitted workflow.   When I attempt to view the workflow's status, I receive the following message: Job Manager is running but encountered a proble...

    • 3 followers
    • 13 comments
    • 0 votes

  • submission queued for an hour.

    Is there a current issue with Terra?  A submission I made has been in the queued state for an hour. Thanks,  Chet

    • 6 followers
    • 34 comments
    • 0 votes

  • Cannot run workflows...error messagerawls unable to query method repo

    I am unable to run my workflows.  When I open up a method configuration (which links to a workflow in the FireCloud method repo), I receive the following error notification:

    • 2 followers
    • 3 comments
    • 0 votes