Geraldine Van der Auwera
Posts
Votes on activity by Geraldine Van der Auwera
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Nextflow support in Terra
Nextflow is a popular bioinformatics workflow language with a fast-growing community of users. It is technically possible to submit Nextflow workflows from within a notebook in Terra but it would b...
- 10 followers
- 11 comments
- 25 votes
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Make workspace environment variables available in workflow configuration
We have workflows that need to write outputs to a specific path in the workspace bucket, eg the Cumulus workflow in the Intro to HCA data workspace. This is usually done when the workflow does not ...
- 4 followers
- 3 comments
- 5 votes
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Add comment log to the workspace
I'd like to be able to post comments in my workspace (either in the dashboard or in a separate tab, with timestamps and author ID associated) to keep track of events/observations in the course of a...
- 2 followers
- 1 comment
- 1 vote
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Ability to create/modify cloud environments from the Cloud Environments page
At the moment I have to be inside a workspace to have access to the control panel that creates/modifies the cloud environment for notebooks belonging that workspace's billing project. Since there i...
- 4 followers
- 3 comments
- 1 vote
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Support bring-your-own app in Cloud Environments
It would be great to be able to run arbitrary applications within a Cloud Environment, similar to the "custom environment" functionality that allows us to make eg a custom Notebook environment — bu...
- 2 followers
- 1 comment
- 0 votes
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Terra Open Science Contest - You be the judge!
Earlier this month, we challenged the Terra community to share their work in open workspaces to promote computational reproducibility and FAIR principles. In the spirit of rewarding good work, we m...
- 1 follower
- 0 comments
- 0 votes