User

Geraldine Van der Auwera

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Total activity 70
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Posts

Recent activity by Geraldine Van der Auwera

  • Support bring-your-own app in Cloud Environments

    It would be great to be able to run arbitrary applications within a Cloud Environment, similar to the "custom environment" functionality that allows us to make eg a custom Notebook environment — bu...

    • 2 followers
    • 1 comment
    • 0 votes
  • Nextflow support in Terra

    Nextflow is a popular bioinformatics workflow language with a fast-growing community of users. It is technically possible to submit Nextflow workflows from within a notebook in Terra but it would b...

    • 6 followers
    • 9 comments
    • 17 votes
  • Add comment log to the workspace

    I'd like to be able to post comments in my workspace (either in the dashboard or in a separate tab, with timestamps and author ID associated) to keep track of events/observations in the course of a...

    • 2 followers
    • 1 comment
    • 1 vote
  • Make workspace environment variables available in workflow configuration

    We have workflows that need to write outputs to a specific path in the workspace bucket, eg the Cumulus workflow in the Intro to HCA data workspace. This is usually done when the workflow does not ...

    • 4 followers
    • 3 comments
    • 2 votes
  • Ability to create/modify cloud environments from the Cloud Environments page

    At the moment I have to be inside a workspace to have access to the control panel that creates/modifies the cloud environment for notebooks belonging that workspace's billing project. Since there i...

    • 4 followers
    • 3 comments
    • 1 vote
  • Terra Open Science Contest - You be the judge!

    Earlier this month, we challenged the Terra community to share their work in open workspaces to promote computational reproducibility and FAIR principles. In the spirit of rewarding good work, we m...

    • 1 follower
    • 0 comments
    • 0 votes