User

Laura Gauthier

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Posts

Recent activity by Laura Gauthier

  • Workflow submission error: "next on empty iterator"

    In my AoU PMI-ops workspace (https://app.terra.bio/#workspaces/allofus-drc-prod-auxiliary/) I'm trying to run a workflow, but getting a "next on empty iterator" error when I submit There are ~1000...

    • 2 followers
    • 5 comments
    • 0 votes

  • Can't clone 1000G featured workspace

    I'm trying to clone the public (requester pays) NYGC 1000 Genomes workspace, but no dice

    • 2 followers
    • 8 comments
    • 0 votes

  • How do I access the data model from a notebook in Azure?

    I copied a notebook from Terra on GCP over to an Azure workspace, but it won't work anymore. Specifically, I'm trying to use the firecloud API to access the data model, but apparently that's not in...

    • 2 followers
    • 2 comments
    • 0 votes

  • Big submission "fails to fetch" but does submit

    For the All of Us auxilliary data generation, I have a couple workflows I need to run on ~500,000 samples. I'm trying to do it in sample_sets of <=100,000.  Those sample sets appear to not submit.....

    • 2 followers
    • 3 comments
    • 0 votes

  • Change workspace billing project

    We would like to effectively transfer billing on a bunch of workspaces, but I'd rather not clone since I'm not confident that everything we need is in the data model.  Is it possible to do a bucket...

    • 2 followers
    • 3 comments
    • 0 votes

  • Unlock workspace is broken

    I'm doing a storage cleanup and I want to delete this old workspace that is locked:  CFF_CysticFibrosisFoundation_WGS_Workspace_GATK4. I'm a billing project owner and I have the option to unlock in...

    • 2 followers
    • 1 comment
    • 0 votes

  • New Terra reference disk?

    We're working on some clinical analysis pipelines as part of the Microsoft Health Futures Project 2 and we'd eventually like to make these pipelines into a sort of showcase Featured Workspace. Thes...

    • 2 followers
    • 1 comment
    • 0 votes

  • Error loading analyses: pet does not have list access

    I'm revisiting a cloned workspace where I've run some workflows before and today I want to do some interactive analysis.  That doesn't seem possible though. This is a workspace that has an authori...

    • 2 followers
    • 9 comments
    • 0 votes

  • "account currently inactive"???

    Hi, I tried to sign in this morning and got the following message: Thank you for registering. Your account is currently inactive. You will be contacted via email when your account is activated. Thi...

    • 2 followers
    • 2 comments
    • 0 votes

  • Job takes >24hr to start

    I submitted two nearly identical jobs and one finished but the other won't start. Same workflow, same method config. The first task in the workflow is a single task that requests a pretty typical V...

    • 2 followers
    • 3 comments
    • 0 votes