Beri
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Recent activity by Beri
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Hi Laura, Thanks for the feedback, I'll double check that the rest of the gatk featured workspaces have at least their main output configs set for the workflows.
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The workflow authors suggested if you are planning to work with a large sample set then try to enabling GnarlyGenotyper instead of GenotypeGVCFs in the workflow. This would require reblocking the g...
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Hi dsilencio, I've forwarded your question to the workflow authors and we'll get back to you with an answer.
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I don't think there would be an easy way in WDL to reorganize the flattened array into a object[String, Array[Files]]. If there is, the best place to find it is in the WDL specification. I'm not c...
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Hi Ashish Agarwal The easiest place you can access the latest implementation GATK's Best Practices workflows to be run on Terra is GATK Best Practices Workflows collection in Dockstore. Currently t...
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I'm happy to hear that you were able to resolve the issue and thanks for posting the steps used to resolve it. Regarding relative imports, this is a feature offered by Dockstore and isn't available...
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Hi Dan Spagnolo For compute resource error messages try increasing the notebook runtime. Follow along this article for details Understanding-and-Customizing-your-Notebook-Runtime. If you think the ...
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Happy to hear the error was solved
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Hey Alex, You should be able to avoid the "unrecognized token" message if you remove the quotes along with the dollar sign.Its best to use the full path of a file instead of abbreviations to avoid ...
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For the first error try removing the quotes and dollar sign from '$runtime_memory' For the second error make sure the files exists.
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