Beri
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Recent activity by Beri
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Lets try running the workflow without the "CreateFoFN" again but instead of running the workflow on the Sample, select Sample_set from the drop down menu in the Tool configurations.
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That's odd, your WDL look fine at first sight. Mind sharing the workspace you're running this workflow in with GROUP_FireCloud-Support@firecloud.org so that we can view the standard log files?
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Hi Sehyun Oh What task is failing and what is the error message? It would be helpful if you could attach the stdout and stderr log files.
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Your SelectVariant input "input_stats_txt" is set as the pon_stats fileinput_stats_txt = M1.output_pon_stats_txt, If you want to use the pon stat txt file than replace the "-V ${VCF_pre}_pon_stat...
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The error is Error: Unable to access jarfile GenomeAnalysisTK.jar You need to edit your SelectVariants command so that its executing the GenomeAnalysisTK.jar file form the correct path in your dock...
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No coercion defined from wom value Normally means there is a discrepancy variables types. The SelectVariants is expecting a String value for `VCF_pre` but it received Array[String]. This is due to...
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You won't be able to ssh into the Notebook VM, but you can access the Notebook VM using Terra's UI "Open Terminal" icon. Which it looks like you've already done. I've found it less likely to free...
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Hi Nick, Can you confirm that you have selected "Configure inputs/outputs using the Workspace Data Model" in your Method Configurations?
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Moved post to the feature request community forum.
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Agreed!!! I worked with a team who are exploring terra and testing their data on a featured workflow. They ended up spending way to much accidently when they changed the configurations and used the...
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