Marco Baggio
Activity overview
Latest activity by Marco Baggio
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Marco Baggio commented,
Hi Josh, Thank you so much for looking into it and also thank you for the workaround. As I mainly need to export the entire data table, it is perfectly adequate for me while your team works on it. ...
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Marco Baggio commented,
Hi Josh, The workspace is shared, the link is https://app.terra.bio/#workspaces/KIDlab/WES All data tables are affected, the example I showed in my first post is from the "sample" table. Thanks for...
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Marco Baggio created a post,
Bug Report: export tsv/to clipboard does not handle reference type correctly
When exporting a data table containing entries that are references (both with Download as TSV or Copy to clipboard), they get exported as strings instead (see screenshot below, weskit refers to ano...
- Marco Baggio
- 2 followers
- 5 comments
- 0 votes
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Marco Baggio commented,
Hi Samantha, Pulling the bigger Docker image takes about twice as much as the fastest method (localizing the zip archive and unzipping), i.e. ~60 minutes vs ~30 minutes (probably due to limitations...
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Marco Baggio commented,
Hi Samantha, Thank you, that is indeed a great idea! I am just worried about adding 26GB to the image (it currently sits at 1GB), but I will test it and see how it compares to the current solution ...
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Marco Baggio commented,
An alternative solution to localize multiple files is to list them in a text file, one line per file (obtained for example with gsutil ls) and use the read_lines method from the WDL specification. ...
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Marco Baggio created a post,
Localizing folders with many files
I am running the ensembl variant effect predictor (vep) as part of my workflow. I stored the vep database in a sub-folder of the google bucket associated to the workspace. The vep tool (run via doc...
- Marco Baggio
- 5 followers
- 9 comments
- 0 votes