Nikhil Shingte

Member since August 12, 2023 17:15

Total activity 4

Last activity August 16, 2023 15:49

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Activity overview

Latest activity by Nikhil Shingte

Nikhil Shingte commented, August 16, 2023 15:49
Hi Pamela, Sure. Changes are present in "test-long-read-canu-assembly" branch in my forked repository. https://github.com/nikhil777shingte/long-read-pipelines/tree/test-long-read-canu-assembly Happ...
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- August 16, 2023 15:49
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Nikhil Shingte commented, August 15, 2023 04:39
Thanks for your response. I was able to clone the workflow on github and make changes to pass required resource configurations. With these changes, I was able to run the assembly successfully. Look...
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- August 15, 2023 04:39
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Nikhil Shingte created a post, August 12, 2023 17:15
Canu Assembly failure for Long read pipeline with Mouse Genome reference

I am trying to run a long read pipeline with ONT long reads data for mouse models. I was able to run https://github.com/broadinstitute/long-read-pipelines/blob/kvg_guppy_cpu/wdl/pipelines/ONT/Pre...
- Nikhil Shingte
- August 12, 2023 17:15
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- 5 comments
- 0 votes