Maha Shady

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3. hg19 and hg38 TCGA workspaces

Hi Emil,  Thanks for following up. Yes, the hg38 workspaces do not have bams included, only the hg19 workspaces do. I will reassess the needs for my project and may end up just using the hg19 files...

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• November 02, 2021 20:21
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3. hg19 and hg38 TCGA workspaces

Hi Emil,  Thanks for following up! I do think the update notebook ran successfully. I think the problem is that that original workspaces itself doesn't have a column for bams. Here's a screenshot o...

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• October 23, 2021 12:55
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3. hg19 and hg38 TCGA workspaces

Sure, I was using this one: https://app.terra.bio/#workspaces/broad-firecloud-tcga/TCGA_SKCM_hg38_ControlledAccess_GDCDR-12-0_DATA  Thanks!   Maha

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• October 12, 2021 21:59
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3. hg19 and hg38 TCGA workspaces

Hi Emil,  Thank you for the clarifications, I followed the steps you mentioned. However, I continue to have the problem that the the data tables do not include any columns for bam files. How can I ...

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• October 10, 2021 13:46
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