User

Stephanie Gogarten

Member since
Total activity 87
Last activity
Following 0 users
Followed by 0 users
Votes 11
Subscriptions 26

Posts

Votes on activity by Stephanie Gogarten

  • Allow workflow input from multiple data tables

    It would be very helpful if a workflow could take inputs from multiple data tables. Not all use cases are covered by the <x>, <x>_set model as the only table combinations in a single workflow, for ...

    • 2 followers
    • 1 comment
    • 8 votes

  • Remove a workspace from "My Workspaces"?

    Is it possible to remove myself from a workspace that has been shared with me, so it no longer shows up in "My Workspaces"? It's frustrating to have my list of workspaces cluttered with relics of p...

    • 3 followers
    • 4 comments
    • 1 vote

  • Version control for notebooks

    How do other Terra users manage version control for notebooks?

    • 2 followers
    • 4 comments
    • 1 vote

  • "view in cloud storage" option no longer available

    With the switch to the new Folder icon for viewing files in the workspace bucket, when I click on a file name, I no longer see a preview of the file or the option to "View in cloud storage". Please...

    • 2 followers
    • 1 comment
    • 0 votes

  • RStudio doesn't save installed packages after one pause/resume cycle

    I've noticed that when I pause and resume an RStudio environment, it starts up with the packages I've installed and the last state of my R session - but only the very first time I resume. If I make...

    • 2 followers
    • 1 comment
    • 0 votes

  • Workflow outputs not displayed in Job History "outputs" tab

    In the main Job History page on Terra, the "Outputs" tab only contains values if the workflow was run on a data table. If the workflow was run on file paths so that outputs are not written to a dat...

    • Edited
    • 2 followers
    • 1 comment
    • 0 votes

  • Copy RStudio html output to notebooks/

    When syncing an RStudio notebook to the notebooks/ folder, it would be very helpful to copy the .nb.html file as well as the .Rmd file. This way users would be able to view the output of their note...

    • 2 followers
    • 1 comment
    • 0 votes

  • tnu drs commands returning error code

    I'm trying to use a controlled-access file with a drs link in the terminal from an RStudio cloud environment on Terra. I can copy the curl command to download the file via the File browser and run ...

    • 2 followers
    • 2 comments
    • 0 votes

  • Workflow succeeded despite error code

    I am writing a workflow that contains a series of commands in the command block. If the final command returns an error code, the workflow fails, but if an earlier command in the series returns an e...

    • Edited
    • 2 followers
    • 1 comment
    • 0 votes

  • Size limits on data tables?

    We are trying to create very large data tables in a workspace to track simulated genotype data. We are using the Bioconductor::AnVIL R functions avtable_import and avtable_import_set to write to th...

    • 2 followers
    • 1 comment
    • 0 votes