
Stephanie Gogarten
Posts
Recent activity by Stephanie Gogarten
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Size limits on data tables?
We are trying to create very large data tables in a workspace to track simulated genotype data. We are using the Bioconductor::AnVIL R functions avtable_import and avtable_import_set to write to th...
- 2 followers
- 1 comment
- 0 votes
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Latest 1000G VCF files on AnVIL?
Are the most recent VCF files from the high-coverage 1000 Genomes dataset available on AnVIL, or are there plans to make them available soon? The 1000 Genomes public workspace only has the much old...
- 2 followers
- 1 comment
- 0 votes
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Error "Permission 'storage.buckets.list' denied on resource" when using gsutil
Following the instructions in the support articles here and here leads to errors with `gsutil ls`: stephanie Applications $ ./google-cloud-sdk/bin/gsutil lsAccessDeniedException: 403 sdmorris@uw.ed...
- Edited
- 2 followers
- 9 comments
- 0 votes
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Show full entries in Workspace Data table
In the Workspace Data table, if I enter longer text in the "value" or "description" fields, there seems to be no way to view the entire contents of the field via the web interface. Downloading as a...
- 2 followers
- 3 comments
- 0 votes
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Remove public workspaces from notification settings
In my user profile under "Notification settings", I have the option to set submission notifications for workspaces I have access to. However, this feature is basically unusable because it is so clu...
- 2 followers
- 1 comment
- 0 votes
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Remove a workspace from "My Workspaces"?
Is it possible to remove myself from a workspace that has been shared with me, so it no longer shows up in "My Workspaces"? It's frustrating to have my list of workspaces cluttered with relics of p...
- 3 followers
- 4 comments
- 1 vote
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Analyses tab: error previewing analysis
Using the new beta Analyses tab, I created an RStudio notebook and ran some code in an RStudio environment. I later returned to the "Analyses" tab and clicked on the notebook name, but I got an "Er...
- 3 followers
- 14 comments
- 0 votes
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Bug report: duplicate entities appearing in sets
Adding entities to sets doesn't check if those entities are already present, leading to duplicate entities. For example, say I create a set "set1" with entities "sample1", "sample2", "sample3". If ...
- 4 followers
- 8 comments
- 0 votes
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Allow workflow input from multiple data tables
It would be very helpful if a workflow could take inputs from multiple data tables. Not all use cases are covered by the <x>, <x>_set model as the only table combinations in a single workflow, for ...
- 2 followers
- 1 comment
- 7 votes
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Version control for notebooks
How do other Terra users manage version control for notebooks?
- 2 followers
- 4 comments
- 1 vote