User

Stephanie Gogarten

Member since
Total activity 75
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Votes 10
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Posts

Recent activity by Stephanie Gogarten

  • Workflow succeeded despite error code

    I am writing a workflow that contains a series of commands in the command block. If the final command returns an error code, the workflow fails, but if an earlier command in the series returns an e...

    • Edited
    • 2 followers
    • 1 comment
    • 0 votes
  • Size limits on data tables?

    We are trying to create very large data tables in a workspace to track simulated genotype data. We are using the Bioconductor::AnVIL R functions avtable_import and avtable_import_set to write to th...

    • 2 followers
    • 1 comment
    • 0 votes
  • Latest 1000G VCF files on AnVIL?

    Are the most recent VCF files from the high-coverage 1000 Genomes dataset available on AnVIL, or are there plans to make them available soon? The 1000 Genomes public workspace only has the much old...

    • 2 followers
    • 1 comment
    • 0 votes
  • Error "Permission 'storage.buckets.list' denied on resource" when using gsutil

    Following the instructions in the support articles here and here leads to errors with `gsutil ls`: stephanie Applications $ ./google-cloud-sdk/bin/gsutil lsAccessDeniedException: 403 sdmorris@uw.ed...

    • Edited
    • 2 followers
    • 9 comments
    • 0 votes
  • Show full entries in Workspace Data table

    In the Workspace Data table, if I enter longer text in the "value" or "description" fields, there seems to be no way to view the entire contents of the field via the web interface. Downloading as a...

    • 2 followers
    • 3 comments
    • 0 votes
  • Remove public workspaces from notification settings

    In my user profile under "Notification settings", I have the option to set submission notifications for workspaces I have access to. However, this feature is basically unusable because it is so clu...

    • 2 followers
    • 1 comment
    • 0 votes
  • Remove a workspace from "My Workspaces"?

    Is it possible to remove myself from a workspace that has been shared with me, so it no longer shows up in "My Workspaces"? It's frustrating to have my list of workspaces cluttered with relics of p...

    • 3 followers
    • 4 comments
    • 1 vote
  • Analyses tab: error previewing analysis

    Using the new beta Analyses tab, I created an RStudio notebook and ran some code in an RStudio environment. I later returned to the "Analyses" tab and clicked on the notebook name, but I got an "Er...

    • 3 followers
    • 14 comments
    • 0 votes
  • Bug report: duplicate entities appearing in sets

    Adding entities to sets doesn't check if those entities are already present, leading to duplicate entities. For example, say I create a set "set1" with entities "sample1", "sample2", "sample3". If ...

    • 5 followers
    • 10 comments
    • 0 votes
  • Allow workflow input from multiple data tables

    It would be very helpful if a workflow could take inputs from multiple data tables. Not all use cases are covered by the <x>, <x>_set model as the only table combinations in a single workflow, for ...

    • 2 followers
    • 1 comment
    • 7 votes