
Stephanie Gogarten
Comments
Votes on activity by Stephanie Gogarten
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This feature would also be very useful for testing workflows before they're ready to be shared with others. I'd prefer if my public Dockstore workflows were not cluttered with things like "test dat...
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- 2 votes
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I see that this feature has been implemented, but it seems limited to workspaces that have been shared with me directly, and I can't use it for the workspaces I would most like to remove from my li...
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- 1 vote
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I especially want to upvote the request to have RStudio notebooks viewable under the "Notebooks" tab. Many researchers prefer working in RStudio, and being able to quickly view the .nb.html output ...
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- 1 vote
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I submitted a separate ticket about the error in relinking accounts; it was a bug and has now been fixed. The issue above seems to have resolved as well; `tnu drs info` gives the expected response.
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- 0 votes
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Thanks Ash! I feel like the bigger issue here is a failure of Dockstore search, because even knowing that the exact workflow I want exists, it's not straightforward to find it. I posted about this ...
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- 0 votes
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Is there now a readily available WDL to run `samtools index`? I tried searching for one on dockstore, but got >200 results for WDLs that contain indexing somewhere as a step. I also tried searching...
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- 0 votes
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Is it possible to preserve the ordering in the initial TSV file (or Python/R table when interacting with data tables programmatically)? Our project will be creating hundreds of workspaces, so chang...
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- 0 votes
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Interesting, when I click on the file (which has a DRS identifier), I get a curl command to download instead of gsutil. So maybe this is a known limitation of gsutil for controlled access data; it ...
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- 0 votes
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I just tried again after several days and got the same error: gsutil -u terra-c9b4d853 cp gs://nih-nhlbi-topmed-released-phs000964-c3/phs000964.v3.pht004839.v2.p1.TOPMed_WGS_JHS_Sample.MULTI.txt.gz...
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- 0 votes
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I have linked my NIH account, as well as my account with NHLBI BioData Catalyst Framework Services, which is what gives me access to this particular file via its DRS and terra-notebook-utils. I jus...
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- 0 votes