
Stephanie Gogarten
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Recent activity by Stephanie Gogarten
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I submitted a separate ticket about the error in relinking accounts; it was a bug and has now been fixed. The issue above seems to have resolved as well; `tnu drs info` gives the expected response.
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Thanks Ash! I feel like the bigger issue here is a failure of Dockstore search, because even knowing that the exact workflow I want exists, it's not straightforward to find it. I posted about this ...
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Is there now a readily available WDL to run `samtools index`? I tried searching for one on dockstore, but got >200 results for WDLs that contain indexing somewhere as a step. I also tried searching...
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Is it possible to preserve the ordering in the initial TSV file (or Python/R table when interacting with data tables programmatically)? Our project will be creating hundreds of workspaces, so chang...
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Interesting, when I click on the file (which has a DRS identifier), I get a curl command to download instead of gsutil. So maybe this is a known limitation of gsutil for controlled access data; it ...
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I just tried again after several days and got the same error: gsutil -u terra-c9b4d853 cp gs://nih-nhlbi-topmed-released-phs000964-c3/phs000964.v3.pht004839.v2.p1.TOPMed_WGS_JHS_Sample.MULTI.txt.gz...
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I have linked my NIH account, as well as my account with NHLBI BioData Catalyst Framework Services, which is what gives me access to this particular file via its DRS and terra-notebook-utils. I jus...
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My account is not a user on the google billing project, so that must be the problem for the first part of this question. A subset of our team manages Google billing, and we create new workspaces un...
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I'm referring to the "Workspace Data" table with Key/Value/Description columns, which has no way to resize the columns.
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Thanks, I was able to do that and see that it's possible. However, the format makes no sense and is not user-friendly at all. The fields are sorted into a completely random order, and the second ro...
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