User

Stephanie Gogarten

Member since
Total activity 83
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Posts

Recent activity by Stephanie Gogarten

  • Remove public workspaces from notification settings

    In my user profile under "Notification settings", I have the option to set submission notifications for workspaces I have access to. However, this feature is basically unusable because it is so clu...

    • 2 followers
    • 1 comment
    • 0 votes

  • Remove a workspace from "My Workspaces"?

    Is it possible to remove myself from a workspace that has been shared with me, so it no longer shows up in "My Workspaces"? It's frustrating to have my list of workspaces cluttered with relics of p...

    • 3 followers
    • 4 comments
    • 1 vote

  • Analyses tab: error previewing analysis

    Using the new beta Analyses tab, I created an RStudio notebook and ran some code in an RStudio environment. I later returned to the "Analyses" tab and clicked on the notebook name, but I got an "Er...

    • 3 followers
    • 14 comments
    • 0 votes

  • Bug report: duplicate entities appearing in sets

    Adding entities to sets doesn't check if those entities are already present, leading to duplicate entities. For example, say I create a set "set1" with entities "sample1", "sample2", "sample3". If ...

    • 5 followers
    • 10 comments
    • 0 votes

  • Allow workflow input from multiple data tables

    It would be very helpful if a workflow could take inputs from multiple data tables. Not all use cases are covered by the <x>, <x>_set model as the only table combinations in a single workflow, for ...

    • 2 followers
    • 1 comment
    • 7 votes

  • Version control for notebooks

    How do other Terra users manage version control for notebooks?

    • 2 followers
    • 4 comments
    • 1 vote

  • Workflow input from multiple data tables?

    Is there a way to provide inputs from multiple data tables to a workflow? My use case is that I have three data tables: "sample", "sample_set", and "vcf" (where the "vcf" table has 22 rows, one per...

    • 3 followers
    • 2 comments
    • 0 votes

  • accessing list of entities in a sample set in WDL

    I have both a sample table and a sample set table, where each row in the sample set table contains a subset of samples. I want to write a WDL workflow that writes the list of samples in a set to a ...

    • 2 followers
    • 4 comments
    • 0 votes

  • how to view WDL output string in Terra?

    I have a workflow that produces a string as output. How can I view this string in my workspace?

    • 2 followers
    • 7 comments
    • 0 votes

  • output files hidden in glob-* directories

    I have a workflow that writes multiple output files organized in subdirectories. I tried to map these various output files to informatively named workflow outputs, like so: Array[File] imputed = g...

    • 2 followers
    • 1 comment
    • 0 votes