Emil Furat

1. Community
2. General Discussion
3. More Control Over Files Being Downloaded to Local Space by Workflow

Hi William,   Thanks for reaching out. To control how your workflow downloads files to the disk associated with your workflow VM you will need to modify the WDL of this workflow. One possible optio...

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• November 19, 2021 17:37
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1. Community
2. Active Feature Requests
3. RStudio and Jupyter in one environment

Hi Peter,​    Thank you for writing in! I've sent this request to our development team for consideration, and I'll be happy to follow up with you if this feature gets built.   Kind regards, Emil​ 

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• November 17, 2021 20:45
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1. Community
2. General Discussion
3. Data Import Still in Progress

Hi Hannah,   Thanks for reaching out. Large data imports weren't working for a bit yesterday but they should be functional now.  It's not possible to check the status of a data import through the T...

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• Edited November 09, 2021 22:00
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1. Community
2. Active Feature Requests
3. CWL Support in Terra

Hi Andrey, Thank you for writing in about your support for this feature. I will inform our product team so that they are aware. Kind regards, Emil

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• Edited November 09, 2021 20:30
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1. Community
2. General Discussion
3. how to view WDL output string in Terra?

Hi Stephanie,   Have you been able to get the job manager for your submission to open? The error you received in the Job Manager is usually transient, however, some users have received this error b...

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• November 08, 2021 16:28
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1. Community
2. General Discussion
3. Issue with accessing the external bucket for ImportGVCFs task in GATK joint-genotyping workflow

Hi Zih-Hua,   The command you used shows that you have access to all of the files inside of the sample_name_map folder - I am wondering if you might still be missing access to the other folders in ...

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• Edited November 04, 2021 14:03
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1. Community
2. General Discussion
3. Issue with accessing the external bucket for ImportGVCFs task in GATK joint-genotyping workflow

Hi Zih-Hua,Thank you for confirming that for me.Your workflows have been failing on the following command in your ImportGVCFs task: ${gatk_path} --java-options "-Xmx4g -Xms4g" \ GenomicsDBImport...

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• Edited November 03, 2021 17:04
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1. Community
2. General Discussion
3. how to view WDL output string in Terra?

Hi Stephanie,   We haven't heard from you in a couple of days so I just wanted to check-in and see how things were going. Have you had any luck finding the outputs from your workflow? If we can hel...

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• November 02, 2021 20:10
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1. Community
2. General Discussion
3. Issue with accessing the external bucket for ImportGVCFs task in GATK joint-genotyping workflow

Hi Zih-Hua,   No worries, let us see if we can find an alternate solution to your problem. A member of our engineering team was able to pull the metadata script from the successful run of your work...

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• November 02, 2021 17:04
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1. Community
2. Active Feature Requests
3. adding CTAT to 'Projects' tab on left panel of featured workspace page?

Hello Brian,​    Thank you for writing in! I've sent this request to our development team for consideration, and I'll be happy to follow up with you if this feature gets built.   Kind regards, Emil​ 

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• November 02, 2021 15:46
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