Emil Furat

1. Community
2. Active Feature Requests
3. CWL Support in Terra

Hi Andrey, Thank you for writing in about your support for this feature. I will inform our product team so that they are aware. Kind regards, Emil

• View comment
• Edited November 09, 2021 20:30
• 0 votes

1. Community
2. General Discussion
3. how to view WDL output string in Terra?

Hi Stephanie,   Have you been able to get the job manager for your submission to open? The error you received in the Job Manager is usually transient, however, some users have received this error b...

• View comment
• November 08, 2021 16:28
• 0 votes

1. Community
2. General Discussion
3. Issue with accessing the external bucket for ImportGVCFs task in GATK joint-genotyping workflow

Hi Zih-Hua,   The command you used shows that you have access to all of the files inside of the sample_name_map folder - I am wondering if you might still be missing access to the other folders in ...

• View comment
• Edited November 04, 2021 14:03
• 0 votes

1. Community
2. General Discussion
3. Issue with accessing the external bucket for ImportGVCFs task in GATK joint-genotyping workflow

Hi Zih-Hua,Thank you for confirming that for me.Your workflows have been failing on the following command in your ImportGVCFs task: ${gatk_path} --java-options "-Xmx4g -Xms4g" \ GenomicsDBImport...

• View comment
• Edited November 03, 2021 17:04
• 0 votes

1. Community
2. General Discussion
3. how to view WDL output string in Terra?

Hi Stephanie,   We haven't heard from you in a couple of days so I just wanted to check-in and see how things were going. Have you had any luck finding the outputs from your workflow? If we can hel...

• View comment
• November 02, 2021 20:10
• 0 votes

1. Community
2. General Discussion
3. Issue with accessing the external bucket for ImportGVCFs task in GATK joint-genotyping workflow

Hi Zih-Hua,   No worries, let us see if we can find an alternate solution to your problem. A member of our engineering team was able to pull the metadata script from the successful run of your work...

• View comment
• November 02, 2021 17:04
• 0 votes

1. Community
2. Active Feature Requests
3. adding CTAT to 'Projects' tab on left panel of featured workspace page?

Hello Brian,​    Thank you for writing in! I've sent this request to our development team for consideration, and I'll be happy to follow up with you if this feature gets built.   Kind regards, Emil​ 

• View comment
• November 02, 2021 15:46
• 0 votes

1. Community
2. Active Feature Requests
3. Add 'delete' option from the job history table row

Hello Brian,​    Thank you for writing in! I've sent this request to our development team for consideration, and I'll be happy to follow up with you if this feature gets built.   Kind regards, Emil​ 

• View comment
• November 02, 2021 14:43
• 0 votes

1. Community
2. General Discussion
3. how to view WDL output string in Terra?

Hi Stephanie,   Does the job manager continue to not load? Instead of finding your output file by going through the job manager, you can also access your workspace bucket by clicking on the link in...

• View comment
• October 29, 2021 19:59
• 0 votes

1. Community
2. General Discussion
3. how to view WDL output string in Terra?

Hi Stephanie,   I forgot to mention - the outputs from your workflows will also be written to your data tables if you provided an attribute for them to be written to. You can see in the screenshot ...

• View comment
• Edited October 29, 2021 14:30
• 0 votes