Featured Workspace Help

Get help with featured workspaces - what to do before you post! Pinned
- Tiffany Miller
- Edited April 01, 2020 20:16
- 0 votes
- 0 comments
how to run latest GATK Best Practices workflows Pinned Answered
- Ashish Agarwal
- August 26, 2020 21:07
- 0 votes
- 2 comments
Confusion on how to set up read group-level processing in workspaces
- Chris Whelan
- March 15, 2024 17:10
- 0 votes
- 1 comment
Error running SpaceRanger Workflow from lilab-bcb/cumulus
- Rômulo Galvani
- February 16, 2024 14:51
- 0 votes
- 3 comments
Best strategy to reverse the GVCF reblocking step on Terra
- Matilde
- Edited July 26, 2023 18:24
- 0 votes
- 0 comments
Somatic CNV workflow
- Indrani Datta
- June 23, 2023 14:56
- 0 votes
- 0 comments
Terra GCP Somatic CNV workflow
- Indrani Datta
- June 02, 2023 17:34
- 0 votes
- 2 comments
Somatic copy number variants (CNVs) and Panel of Normals creation
- Indrani Datta
- May 16, 2023 16:12
- 0 votes
- 5 comments
Whole-Genome-Analysis-Pipeline failing in ImportGVCFs step
- Aloysius Domingo
- May 08, 2023 16:09
- 0 votes
- 6 comments
Using a VCF from an alternate germline caller for joint calline
- James Jennings
- April 24, 2023 16:30
- 0 votes
- 1 comment
Non-human reference genome for GATK SV Pipeline
- Anamica Bedi de Silva
- March 30, 2023 23:05
- 0 votes
- 0 comments
GATK SV required inputs
- Edward C
- Edited July 15, 2022 16:12
- 0 votes
- 10 comments
processing-for-variant-discovery-gatk4 workflow: fails repeatedly at SamToFastqAndBwaMem step
- Arun Seetharam
- July 06, 2022 18:40
- 0 votes
- 4 comments
Running `GATK Best Practices Germline SNPs and INDELS` on custom genome
- Arun Seetharam
- July 04, 2022 19:43
- 0 votes
- 4 comments
file not found
- Juerg Straubhaar
- May 23, 2022 13:01
- 0 votes
- 1 comment
GenotypeGVCFs using output from WholeGenomeGermlineSingleSample_v3.0.0
- Don Conrad
- March 29, 2022 15:34
- 0 votes
- 2 comments
Paired-Fastq-to-Unmapped-Bam can't open my fastq.gz files
- Alex Sticco
- February 06, 2022 22:15
- 0 votes
- 9 comments
Workflow Cost Estimator - getting 404s from API
- Chris Miller
- Edited December 03, 2021 04:24
- 0 votes
- 5 comments
Running ExomeGermlineSingleSample across multiple samples Fails at CheckContamination
- Don Conrad
- Edited November 30, 2021 18:03
- 0 votes
- 2 comments
Mitochondria-SNPs-Indels-hg38 copy
- Halima Alachram
- November 12, 2021 11:06
- 0 votes
- 3 comments
ExomeGermlineSingleSample fails
- Mat Nightingale
- October 18, 2021 13:46
- 0 votes
- 13 comments
Terra-Notebooks-Quickstart Problem
- Robin Karge
- October 25, 2021 14:43
- 0 votes
- 4 comments
Make public viewing without Terra account Completed
- Sehyun Oh
- Edited May 26, 2020 20:31
- 1 vote
- 4 comments
Large WGS cohort genotyping with 'GATK Best Practices Germline SNPs and INDELS' Answered
- dsilencio
- January 28, 2021 19:37
- 0 votes
- 7 comments
CNN configs need outputs
- Laura Gauthier
- May 14, 2021 16:45
- 0 votes
- 2 comments
GATK4-RNA-Germline-VariantCalling sample file failing
- Maayan Baron
- April 15, 2021 02:43
- 0 votes
- 6 comments
gatk4-exome-analysis-pipeline BamProcessing.SortSam fails with Error Code 10 Answered
- Roger Dettloff
- June 06, 2020 23:36
- 0 votes
- 4 comments

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