Hi! I saw a similar post with my question (https://support.terra.bio/hc/en-us/community/posts/360073223011-How-can-I-get-TCGA-data-into-the-notebooks-for-analysis-? ), but it doesn't fully solve my issue.
1. I need to make my own 'copy' of the Terra-hosted dataset to my bucket to access it? I just want to make sure that I understand this point correctly.
2. I ran this workflow (https://anvil.terra.bio/#workspaces/broad-firecloud-tcga/TARGET_AML_hg38_OpenAccess_GDCDR-12-0_DATA/workflows/broadinstitute_cga/gdc_file_downloader__RNAseq__HTSeqCounts__gene_expression_quantification__txt__cfg) to export the RNAseq count matrix of TARGET_AML dataset, but it failed. It's somewhat cumbersome to find the error message, which is still not informative enough to resolve my issue. Here is the stderr:
Traceback (most recent call last):
File "/opt/src/disk_size_calculator.py", line 71, in <module>
File "/opt/src/disk_size_calculator.py", line 51, in main
File "/opt/src/disk_size_calculator.py", line 26, in get_metadata
Could you help me to resolve this issue? Thanks!