Workflow input from multiple data tables?

Post author
Stephanie Gogarten

Is there a way to provide inputs from multiple data tables to a workflow? My use case is that I have three data tables: "sample", "sample_set", and "vcf" (where the "vcf" table has 22 rows, one per chromosome). I want to run a workflow that takes a list of sample_ids from a sample_set, and also takes a VCF file from the vcf table as input. Is this currently possible, or do I have to store the paths to VCF files in my workspace in a different way?

Comments

2 comments

  • Comment author
    Jason Cerrato

    Hi Stephanie,

    Thanks for writing in! At this time, pulling inputs from multiple data tables is not possible, except for situations where you are running a workflow on a set table and referencing data from the underly data entity table (for example, running on a sample_set root entity type and calling on data from the sample table).

    Would it be possible/appropriate to add a column to your sample or sample_set table with the VCF data?

    Kind regards,

    Jason

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  • Comment author
    Jason Cerrato

    Hey Stephanie,

    We haven't heard from you in a little while. How are things going here? If we can help with anything else, please let us know.

    Kind regards,

    Jason

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