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How do I save a folder as a checkpoint?

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4 comments

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    Samantha (she/her)

    Hi Milan Parikh,

     

    Thanks for reaching out. Unfortunately, you can only specify one checkpoint file, not a folder of files. However, there may be other solutions for what you are trying to do. Would you be able to share your WDL with me (svelasqu@broadinstitute.org) so I can have our engineers take a closer look?

     

    Best,
    Samantha

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    Milan Parikh

    Hi Samantha,

    Sure, I've just emailed it to you!

    Thanks,

    Milan Parikh

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    Samantha (she/her)

    Hi Milan Parikh,

    Sorry for the delayed response. Our engineers looked into this and unfortunately, it's not directly possible to do this through your WDL, but it might be possible if you can have your R script periodically zip your output folder and have that be checkpointed.

    Best,

    Samantha

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    Milan Parikh

    Hi Samantha,

    Thank you for the update, I'll try to find a way to do that.

    Best,

    Milan Parikh

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