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Run workflow with data on gs://brain-genomics-public/

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4 comments

  • Avatar
    Samantha (she/her)

    Hi Ruolin Liu,

     

    Thanks for reaching out. Can you share the workspace where you are seeing this issue with GROUP_FireCloud-Support@firecloud.org by clicking the Share button in your workspace? The Share option is in the three-dots menu at the top-right.

    1. Add GROUP_FireCloud-Support@firecloud.org to the User email field and press enter on your keyboard.
    2. Click Save.

     

    Let us know the workspace name, as well as the relevant submission and workflow IDs. We’ll be happy to take a closer look as soon as we can.

     

    Best,

    Samantha

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  • Avatar
    Ruolin Liu

    Thank you for looking into this! I just shared the workspace. Let me know if you still cannot see it. 

    workspace name

    blood-biopsy/bb-Mutect2-Gatk4,

    and the submission_id is

    e9d29c1d-31f0-4097-86f3-58982616e1d1

     
     
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  • Avatar
    Samantha (she/her)

    Hi Ruolin Liu,

     

    Did you upload your data tables in the correct order, making sure to enable the option to 'Create participant, sample, and pair associations'? Read more about this here.

     

    I tried cloning your workspace, deleting and re-uploading the data tables tables in order, and was able to successfully submit the workflow.

     

    Best,

    Samantha

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    Ruolin Liu

    Hi Samantha, 

    Thank you for the help! I am able to run it now. 

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