No such file or directory while running python script in wdl
I am newbie to WDL world and trying my first program by wriitng first wdl and calling python script.
myworkflow.wdl
workflow myWorkflow {
call myTask
}
task myTask {
command {
python3 ./script.py
}
output {
String out = read_string(stdout())
}
}
and script.py
#!/usr/bin/python3
print("hello world")
Command for running workflow.jar
java -jar cromwell-58.jar run myWorkflow.wdl
but i am getting error message while running above command.
/usr/local/bin/python3: can't open file '/Users/myuser/wdl/cromwell/cromwell-executions/myWorkflow/6609f4d3-c8f2-4ede-8b60-f570994c6d8a/call-myTask/execution/./script.py: [Errno 2] No such file or directory
While mywokflow.wdl, script.py and cromwell-58.jar are in same folder. How can i fix such issue?
Comments
1 comment
Hi there!
Can you try removing the `./` in front of `script.py` and see if that eliminates the error that you are getting.
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