are there any recommendations for running JointCalling for <50 samples (41)?
my workflow fails with the error;
Job JointGenotyping.CheckSamplesUnique:NA:1 exited with return code 1 which has not been declared as a valid return code. See 'continueOnReturnCode' runtime attribute for more details.
There are fewer than 50 samples in the sample_name_map Having fewer than 50 samples means there likely isn't enough data to complete joint calling
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