I'm running the GATK Somatic Variant calling pipeline on batches of samples, and something has broken between 1/20/2020 and today. My last batch ran fine, but today when I try to run the next batch, using the exact same script, inputs, workspace, and workflow (just a new set of samples), I get this error in red in the "Launching analysis" box:
Validation errors: Extra inputs: Mutect2.Mutect2.TumorCramToBam.mem,Mutect2.Mutect2.Funcotate.default_ram_mb,Mutect2.Mutect2.Funcotate.interval_list,Mutect2.Mutect2.Funcotate.default_disk_space_gb
All of these inputs are blank in my workflow (as they were previously). This is being launched using Cromwell 48, and I feel like maybe that's new -- was this the version in place on 1/20?
Thanks for any help.