Updated hg19 TCGA BAM links not loading in IGV
I have not been able to load the updated TCGA hg19 bam URLs into IGV. The pop up window says "bucket is requestor pays bucket but no user project provided". However, I have provided a user project and the same pop up window/ error occurs. I also tried to download the same bam using gsutil in the terminal window after setting a project, and received the error "BadRequestException: 400 Bucket is requester pays bucket but no user project provided". I have no problem downloading bams that are not the updated hg19 tcga ones.
For reference, the specific bam URL and index URL are --
- bam: gs://5aa919de-0aa0-43ec-9ec3-288481102b6d-temp/tcga/TGCT/DNA/WXS/BI/ILLUMINA/TCGA_MC3.TCGA-2G-AALO-10A-01D-A433-10.cleaned.bam
- bam index: gs://5aa919de-0aa0-43ec-9ec3-288481102b6d-temp/tcga/TGCT/DNA/WXS/BI/ILLUMINA/TCGA_MC3.TCGA-2G-AALO-10A-01D-A433-10.cleaned.bam.bai
I have attached screenshots of the IGV errors I was receiving.
I have been able to reproduce the issue trying to use both Terra and non-Terra GCP projects. Any thoughts would be much appreciated!
We are looking into this! Thank you for reporting it.
Thank you, Tiffany! I would like to add that, at least in my tests, I have the `owner` status on the tested Google Cloud projects, which should have the permissions according to the documentation for requestor pays.
Hi Brendan Reardon and Sabrina Camp - I think this is an IGV issue. I'd suggest leaving comments here to get this fixed: https://github.com/igvteam/igv/issues/489
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