Can I create Mutet2 PON with hg38 instead of hg19?

Post author
Samuel Terkper Ahuno

Dear Terra,

is there any PON/Mutect workflow that uses the hg38 human genome reference other than hg19 required by these gatk workflows?

My analysis_ready_bam were aligned with hg38 and I was wondering if running panel of normals with hg19 (aka b37) will have any significant impact on other downstream analysis?



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