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Ongoing workflow failures with error “key not found”

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    Sushma Chaluvadi

    Hello All,

     

    The 10/15 Docker Hub outage had an impact on Cromwell that extended into 10/16 and 10/17. This impact has now been resolved.

     

    Please confirm if you are able to successfully run Workflows.

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    Adam Nichols

    Hi James - thank you for the feedback, and apologies for the inconvenience.

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    James Gatter

    Working fine for me! Thanks!

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    Adam Haber

    Hi, still getting errors (see below)
    done
     true

     

    error : code 2

     

    details Array[0] [] message "Execution failed: pulling image: docker pull: running ["docker" "pull" "cellranger:3.0.2"]: exit status 1 (standard error: "Error response from daemon: pull access denied for cellranger, repository does not exist or may require 'docker login': denied: requested access to the resource is denied\n")"

     

    metadata : @type "type.googleapis.com/google.genomics.v2alpha1.Metadata" createTime "2019-10-18T14:17:15.849863Z" endTime "2019-10-18T14:19:04.808435277Z"

     

    events Array[6] [{"description":"Worker released","details":{"@type":"type.googleapis.com/google.genomics.v2alpha1.WorkerReleasedEvent","instance":"google-pipelines-worker-239222145a5c2a5edd4aa7e6d1097164","zone":"us-west1-b"},"timestamp":"2019-10-18T14:19:04.808435277Z"},{"description":"Execution failed: pulling image: docker pull: running [\"docker\" \"pull\" \"cellranger:3.0.2\"]: exit status 1 (standard error: \"Error response from daemon: pull access denied for cellranger, repository does not exist or may require 'docker login': denied: requested access to the resource is denied\\n\")","details":{"@type":"type.googleapis.com/google.genomics.v2alpha1.FailedEvent","cause":"Execution failed: pulling image: docker pull: running [\"docker\" \"pull\" \"cellranger:3.0.2\"]: exit status 1 (standard error: \"Error response from daemon: pull access denied for cellranger, repository does not exist or may require 'docker login': denied: requested access to the resource is denied\\n\")","code":"UNKNOWN"},"timestamp":"2019-10-18T14:19:03.532399522Z"},{"description":"Started pulling \"cellranger:3.0.2\"","details":{"@type":"type.googleapis.com/google.genomics.v2alpha1.PullStartedEvent","imageUri":"cellranger:3.0.2"},"timestamp":"2019-10-18T14:18:25.017346022Z"},{"description":"Stopped pulling \"gcr.io/google.com/cloudsdktool/cloud-sdk:264.0.0-slim\"","details":{"@type":"type.googleapis.com/google.genomics.v2alpha1.PullStoppedEvent","imageUri":"gcr.io/google.com/cloudsdktool/cloud-sdk:264.0.0-slim"},"timestamp":"2019-10-18T14:18:23.226581956Z"},{"description":"Started pulling \"gcr.io/google.com/cloudsdktool/cloud-sdk:264.0.0-slim\"","details":{"@type":"type.googleapis.com/google.genomics.v2alpha1.PullStartedEvent","imageUri":"gcr.io/google.com/cloudsdktool/cloud-sdk:264.0.0-slim"},"timestamp":"2019-10-18T14:18:02.126281492Z"},{"description":"Worker \"google-pipelines-worker-239222145a5c2a5edd4aa7e6d1097164\" assigned in \"us-west1-b\"","details":{"@type":"type.googleapis.com/google.genomics.v2alpha1.WorkerAssignedEvent","instance":"google-pipelines-worker-239222145a5c2a5edd4aa7e6d1097164","machineType":"custom-1-2048","zone":"us-west1-b"},"timestamp":"2019-10-18T14:17:16.761218289Z"}]

     

    labels Object {"cromwell-workflow-id":"cromwell-0f658af3-51d4-4ada-a5ee-b0a51bd8c02a","terra-submission-id":"terra-16957d9a-9f58-4c2d-aed1-175cd42bc496","wdl-task-name":"generate-bcl-csv"}

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    Adam Nichols

    Hi Adam - thanks for your post.

    While it definitely looks like something is going wrong with your workflow, the "key not found" error is not present so I would suggest that you make a new thread.

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