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Error: Unable to access jarfile path/to/googlebucket/tool.jar

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    Sushma Chaluvadi

    Hi Emmalyn,

    Yes, any software dependencies that you need to run your Workflow need to be in your docker. The docker image is read in per task so if the picard or fgbio is not present in the docker, the workflow will not work. When picard was called as /usr/gitc/picard.jar that is probably because that is the path to picard in the Docker container.

     

     

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