error installing conda environment
I am trying to create a conda environment in a default python jupityr notebook (I need to install several dependencies for a package in the environment that are not installed in the dafault base). I keep getting an error even though I am following the web instructions exactly. How do I fix this? Ultimately I'm trying to install a bunch of packages in the conda environment from requirements.txt. Thanks!
conda create --clone base --prefix /home/jupyter/RBPamp -y
Source: /opt/conda
Destination: /home/jupyter/RBPamp
The following packages cannot be cloned out of the root environment:
- conda-forge/linux-64::conda-23.7.3-py310hff52083_0
- file:///tmp/conda/linux-64::dlenv-tf-2-11-gpu-1.0.20230823-py310hfd508a8_0
Packages: 185
Files: 45966
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/opt/conda/lib/python3.10/site-packages/conda/exception_handler.py", line 17, in __call__
return func(*args, **kwargs)
File "/opt/conda/lib/python3.10/site-packages/conda/cli/main.py", line 64, in main_subshell
exit_code = do_call(args, parser)
File "/opt/conda/lib/python3.10/site-packages/conda/cli/conda_argparse.py", line 167, in do_call
result = getattr(module, func_name)(args, parser)
File "/opt/conda/lib/python3.10/site-packages/conda/notices/core.py", line 124, in wrapper
return func(*args, **kwargs)
File "/opt/conda/lib/python3.10/site-packages/conda/cli/main_create.py", line 50, in execute
install(args, parser, "create")
File "/opt/conda/lib/python3.10/site-packages/conda/cli/install.py", line 255, in install
clone(
File "/opt/conda/lib/python3.10/site-packages/conda/cli/install.py", line 88, in clone
actions, untracked_files = clone_env(
File "/opt/conda/lib/python3.10/site-packages/conda/misc.py", line 314, in clone_env
symlink(readlink(src), dst)
FileExistsError: [Errno 17] File exists: '../playwright-core/cli.js' -> '/home/jupyter/RBPamp/share/jupyter/lab/staging/node_modules/.bin/playwright-core'
`$ /opt/conda/bin/conda create --clone base --prefix /home/jupyter/RBPamp -y`
environment variables:
CIO_TEST=<not set>
CONDA_ROOT=/opt/conda
CURL_CA_BUNDLE=<not set>
GATK_ZIP_PATH=/tmp/gatk-4.3.0.0.zip
LD_LIBRARY_PATH=/usr/lib/R/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/default-java/lib
/server:/usr/local/cuda/lib64:/usr/local/cuda/lib:/usr/local/lib/x86_6
4-linux-gnu:/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/local/n
vidia/lib:/usr/local/nvidia/lib64:/usr/local/cuda/lib64:/usr/local/cud
a/lib:/usr/local/lib/x86_64-linux-gnu:/usr/local/nvidia/lib:/usr/local
/nvidia/lib64:/usr/local/nvidia/lib:/usr/local/nvidia/lib64
LD_PRELOAD=<not set>
LIBRARY_PATH=/usr/local/cuda/lib64/stubs
PATH=/opt/conda/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sb
in:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/jupyter/.local/b
in:/home/jupyter/packages/bin
PYTHONPATH=/etc/jupyter/custom:/usr/lib/spark/python:/home/jupyter/packages
REQUESTS_CA_BUNDLE=<not set>
SSL_CERT_FILE=<not set>
active environment : None
user config file : /home/jupyter/.condarc
populated config files : /opt/conda/.condarc
conda version : 23.7.3
conda-build version : not installed
python version : 3.10.12.final.0
virtual packages : __archspec=1=x86_64
__glibc=2.31=0
__linux=6.1.100=0
__unix=0=0
base environment : /opt/conda (writable)
conda av data dir : /opt/conda/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /opt/conda/pkgs
/home/jupyter/.conda/pkgs
envs directories : /opt/conda/envs
/home/jupyter/.conda/envs
platform : linux-64
user-agent : conda/23.7.3 requests/2.32.3 CPython/3.10.12 Linux/6.1.100+ ubuntu/20.04.6 glibc/2.31
UID:GID : 1000:100
netrc file : None
offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
If you suspect this error is being caused by a malfunctioning plugin,
consider using the --no-plugins option to turn off plugins.
Example: conda --no-plugins install <package>
Alternatively, you can set the CONDA_NO_PLUGINS environment variable on
the command line to run the command without plugins enabled.
Example: CONDA_NO_PLUGINS=true conda install <package>
Upload successful.
Note: you may need to restart the kernel to use updated packages.
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