On September 20, 2022, the Terra team presented an introduction to Terra for the International Neuroimmune Consortium. This interactive workshop covered how to start working and collaborating securely in Terra. It provided an overview of the architecture of Terra as it relates to cloud-based data sets, tools, and computing resources. Participants explored how data is organized in Terra, and then launched single-cell analyses with the Cumulus workflow and Jupyter Notebooks.
Materials
- The public workspace is available at https://app.terra.bio/#workspaces/help-terra/International_Neuroimmune_Consortium_Workshop_2022
- The slides and registration materials are at http://broad.io/Neuro-2209
- A recording of the webinar will be available soon.
Agenda
All times below are in Eastern Standard Time (ET)
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10:00 am |
Welcome |
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10:10 am |
Intro to the International NeuroImmune Consortium and INPH Data |
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An overview of Terra functionality and platform navigation. |
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10:35 am |
Terra Overview and Platform Tour |
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An overview of Terra functionality and platform navigation. |
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11:10 am |
Cumulus Overview |
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An overview of Cumulus for single-cell analysis |
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11:25 am |
Run the Cumulus Workflow |
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Hands-on activity to try running the Cumulus workflow on workspace data |
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12:00 pm |
Break |
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12:25 pm |
Creating Cloud Environments |
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Hands-on introduction to setting up virtual machines on Terra |
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12:35 pm |
Overview of scFlow Workflow |
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Introduction to data processing with scFlow |
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12:55 pm |
Hands-on Explore Matrices in Jupyter Notebooks |
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Learn tips and tricks for working with workspace data in a virtual machine and try an example analysis |
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1:40 pm |
Wrap-up and Questions |