[2022 Sept] Consortium Introduction to Terra for the International Neuroimmune Consortium

Derek Caetano-Anolles
  • Updated

On September 20, 2022, the Terra team presented an introduction to Terra for the International Neuroimmune Consortium. This interactive workshop covered how to start working and collaborating securely in Terra. It provided an overview of the architecture of Terra as it relates to cloud-based data sets, tools, and computing resources. Participants explored how data is organized in Terra, and then launched single-cell analyses with the Cumulus workflow and Jupyter Notebooks. 

Materials

Agenda

All times below are in Eastern Standard Time (ET)

10:00 am

Welcome

10:10 am

Intro to the International NeuroImmune Consortium and INPH Data

 

An overview of Terra functionality and platform navigation. 

10:35 am

Terra Overview and Platform Tour

 

An overview of Terra functionality and platform navigation. 

11:10 am 

Cumulus Overview

 

An overview of Cumulus for single-cell analysis

11:25 am

Run the Cumulus Workflow

 

Hands-on activity to try running the Cumulus workflow on workspace data

12:00 pm

Break

12:25 pm

Creating Cloud Environments

 

Hands-on introduction to setting up virtual machines on Terra

12:35 pm

Overview of scFlow Workflow

 

Introduction to data processing with scFlow

12:55 pm

Hands-on Explore Matrices in Jupyter Notebooks

 

Learn tips and tricks for working with workspace data in a virtual machine and try an example analysis

1:40 pm 

Wrap-up and Questions

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