BICCN Omics workshop [June 16, 2022]

Liz Kiernan
  • Updated

On June 16, 2022, the Broad Institute's Data Sciences Platform presented a 3-hour virtual webinar as a part of a 2-day workshop series for BICCN (BRAIN Initiative Cell Census Network). This webinar guided users through finding data in the NeMO archive, analyzing it in Terra, and demonstrated how to publish their finished study in the Single Cell Portal (SCP).

Materials

The slides and Terra registration materials are at https://broad.io/biccn2206. Additionally, you can try the accompanying tutorial workspace

A recording of the webinar will be available on the Terra Youtube soon.

Agenda

12:00 pm Intro to Terra/NeMO Portal, Search For Data, and Data Download

1:00 pm Run WDL Workflows–Optimus and CellBender

1:50 pm Break

1:55 pm Explore Data with Jupyter Notebooks

2:25 pm Break

2:30 pm Broad Single Cell Portal

3:15 pm Wrap-up and Conclusion

 

 

 

 

 

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