In this tutorial you will be working through the COVID-19 workspace. The workspace has several workflows that can be used to process COVID raw uBAM sequences but for this tutorial we’ll focus on running the first workflow to import uBAM sequences into the workspace and importing a workflow from Dockstore to validate the uBAM. You will also run a Jupyter Notebook on COVID sample data as an example of performing QC using a notebook. The workspace has several other interesting workflows and tools, we invite you to explore them further by starting with the dashboard description.
The main objectives for this tutorial is to learn :
- How to clone a workspace
- How to run a workflow
- How to import a workflow from Dockstore
- How to run a Jupyter Notebook
Materials
All materials can be found here.
Agenda
|
Start Time |
Topic |
Speaker |
|
3:30 ET |
Logistics
|
Beth Sheets 5 min |
|
3:35 |
Overview of Data Biosphere/AnVIL |
Beth Sheets 10 min |
|
3:45 |
Introduction to Dockstore/Technical
|
Louise Cabansay 20 min |
|
4:05 |
Introduction to Terra
|
Beri Shifaw 25 min |
|
4:30 |
Break - 15 min |
|
|
4:45 |
Tutorial: COVID19 Genomic Analysis Workspace
Check-in?
Check-in?
Check-in? |
Led by: Chat Supported by: |
|
5:45:6:00 |
Wrap Up- 15 min |